SNiPgenie documentation.

Contents:

• Introduction
  • Command line tool
  • Current Features
  • Links
• Installation
  • Linux
  • Windows
• Dependencies
• Funding
• Usage
  • Command Line
  • Use from Python
• Desktop Application
  • Interface
  • Basic workflow
  • Importing files
  • Viewing results
  • Plotting from the tables
  • Adding sample metadata
  • Checking for contamination
  • Create test data
  • File renaming
• M.bovis analysis
  • Spoligotyping
  • Regions of difference
• FAQ
• snipgenie
  • snipgenie package

Indices and tables

• Index

• Module Index

• Search Page